This directory contains the following two examples:

1. Minimization of the UNRES energy of Ac-Ala19-AHMe (file ala.inp)

2. UNRES-regularization of the conformation of the 10-55 fragment of
   the B-domain of staphylococcal protein A, taking the CA trace from NMR
   data (file prota_nmr.pdb).

The reference output files are in directory OUTPUTS. They were obtained
on a Pentium i686 running Linux RedHat 4.0.

To run the examples:

a) Edit the script run.csh to adapt to your settings (see the comments in
   this file).

b) Execute run.csh by typing ./run.csh or source run.csh at your UNIX prompt. 
